PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G271200.1
Common NameB456_008G271200, LOC105765476
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 363aa    MW: 39992.1 Da    PI: 4.5733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G271200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19129178255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Gorai.008G271200.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178
                         89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29128186IPR001471AP2/ERF domain
PfamPF008479.7E-13129178IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21129186IPR016177DNA-binding domain
CDDcd000183.44E-33129185No hitNo description
SMARTSM003803.2E-38129192IPR001471AP2/ERF domain
PROSITE profilePS5103223.63129186IPR001471AP2/ERF domain
PRINTSPR003674.1E-10130141IPR001471AP2/ERF domain
PRINTSPR003674.1E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEHSILCPIK YTEHKNLTRK FRKPAVKSKK VSSDYDRTYG GEGGDVRRIV RVSVTDPDAT  60
DSSSDEDADF FGRQRVKRYV NEINIEVVAA AATTTSGAVN GNRKRTAAEA ATGCRRPVKL  120
SSTNGSGRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD  180
ALTNFVTPPA KENNEKPENL NVSSVSGYES GDESAHNLSS PTSVLNFRTQ SSEETAVEPK  240
KQPHESQEEE SKPLPLKEEE HLVPTESQGE TETNLPDISM YDLPLDFPSV DEFFNTSVSG  300
LSVFDDTDMV LPDSSVFSDG FGDLLVHSPP DFGCSSSSTI CQVDDYFEDI DDLFFSDPLV  360
AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21127185362ATERF1
3gcc_A3e-21127185362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440038.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A0D2RN720.0A0A0D2RN72_G
STRINGVIT_16s0050g02400.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-59cytokinin response factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]